TSS: Rfhg 10135.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000652819.1:0 ENST00000624898.4:0 ENST00000657035.1:0 ENST00000659994.1:0 ENST00000669362.1:0 ENST00000610126.2:0 ENST00000669135.1:0 ENST00000661746.1:0 ENST00000623043.2:0 NR_125955.1:0 NR_125954.1:0 BC043293:0 ENST00000420901.5:13 ENST00000595309.6:-18 ENST00000435253.5:-19 ENST00000597635.6:-41 ENST00000600656.6:-52 ENST00000654698.1:-52
|annotation=promoter-TSS (NR_125955)
|annotation=promoter-TSS (NR_125955)
|ccre_category=N
|ccre_category=N
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|nearest_promoter_id=NR_125955
|nearest_promoter_id=NR_125955
|nearest_refseq=NR_125954
|nearest_refseq=NR_125954
|nearest_transcripts=ENST00000420901.5:13 ENST00000595309.6:-18 ENST00000435253.5:-19 ENST00000597635.6:-41 ENST00000600656.6:-52 ENST00000654698.1:-52
|nearest_unigene=Hs.563856
|nearest_unigene=Hs.563856
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000652819.1 ENST00000624898.4 ENST00000657035.1 ENST00000659994.1 ENST00000669362.1 ENST00000610126.2 ENST00000669135.1 ENST00000661746.1 ENST00000623043.2 BC043293
|transcript_name=ENST00000652819.1 ENST00000624898.4 ENST00000657035.1 ENST00000659994.1 ENST00000669362.1 ENST00000610126.2 ENST00000669135.1 ENST00000661746.1 ENST00000623043.2 NR_125955.1 NR_125954.1 BC043293
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_10135.1
|tss_id=rfhg_10135.1

Revision as of 15:49, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_10135.1
Species:human
Chr:chr1
Start:105618931
End:105618939
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000652819.1:0
ENST00000624898.4:0
ENST00000657035.1:0
ENST00000659994.1:0
ENST00000669362.1:0
ENST00000610126.2:0
ENST00000669135.1:0
ENST00000661746.1:0
ENST00000623043.2:0
NR_125955.1:0
NR_125954.1:0
BC043293:0
GeneID:101928476
HGNC/MGI_ID:HGNC:52464
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000420901.5:13
  • ENST00000595309.6:-18
  • ENST00000435253.5:-19
  • ENST00000597635.6:-41
  • ENST00000600656.6:-52
  • ENST00000654698.1:-52
view more...
Gene_name:LINC01676
Gene_symbol:LINC01676
Gene_synonyms:
Gene_source:HGNC:52464



TATA-Box annotation

Distance to TSS:0
Nearest PromoterID:NR_125955
Entrez ID:101928476
Nearest Unigene:Hs.563856
Nearest Refseq:NR_125954
Nearest Ensembl:ENSG00000230768
Gene Name:LINC01676
Gene Alias:-
Gene Type:ncRNA
CpG%:0.000000
GC%:0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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