TSS: Rfhg 101424.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=D32026:43 D32032:43 D32037:43 L77705:43 AF088716:43 AF088725:43 MG790887:43 ENST00000390412.1:44 D50750:44 AF088724:45 AB076766:46 AB076779:46 D32031:46 AF088723:46 AF088782:46 AF088785:46 AF088799:46 AB076750:47 AB076753:47 AB044104:48 AB076758:48 D32034:48 U07135:48 S69569:48 AF088323:48 AF088524:49 D32036:50 U07138:50 AF088709:50 AF088781:50 AF088790:50 U07137:51 AF088743:51 AF088789:51 AB076763:52 AB076769:52 AF088721:52 AF088728:52 KM004276:52 D31827:53 AF088731:53 M13867:-221 D50744:237 AB044117:238 AB076752:238 AF088726:240 AF088730:241 AB044123:243 AB076767:243 AB076782:243 L77728:243 AF088705:243 D50762:243 AB076785:244 D50755:244 KM004279:248 L77713:249 AF088749:249 LT626065:358
|annotation=intron (NM_001130026, intron 10 of 10)
|annotation=intron (NM_001130026, intron 10 of 10)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_002770
|nearest_promoter_id=NM_002770
|nearest_refseq=NM_002770
|nearest_refseq=NM_002770
|nearest_transcripts=ENST00000390412.1:44 D50750:44 AF088724:45 AB076766:46 AB076779:46 D32031:46 AF088723:46 AF088782:46 AF088785:46 AF088799:46 AB076750:47 AB076753:47 AB044104:48 AB076758:48 D32034:48 U07135:48 S69569:48 AF088323:48 AF088524:49 D32036:50 U07138:50 AF088709:50 AF088781:50 AF088790:50 U07137:51 AF088743:51 AF088789:51 AB076763:52 AB076769:52 AF088721:52 AF088728:52 KM004276:52 D31827:53 AF088731:53 M13867:-221 D50744:237 AB044117:238 AB076752:238 AF088726:240 AF088730:241 AB044123:243 AB076767:243 AB076782:243 L77728:243 AF088705:243 D50762:243 AB076785:244 D50755:244 KM004279:248 L77713:249 AF088749:249 LT626065:358
|nearest_unigene=Hs.449281
|nearest_unigene=Hs.449281
|peak_score=1
|peak_score=1

Revision as of 15:51, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_101424.1
Species:human
Chr:chr7
Start:142796317
End:142796321
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4041351,EH38E2597732)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:D32026:43
D32032:43
D32037:43
L77705:43
AF088716:43
AF088725:43
MG790887:43
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000390412.1:44
  • D50750:44
  • AF088724:45
  • AB076766:46
  • AB076779:46
  • D32031:46
  • AF088723:46
  • AF088782:46
  • AF088785:46
  • AF088799:46
  • AB076750:47
  • AB076753:47
  • AB044104:48
  • AB076758:48
  • D32034:48
  • U07135:48
  • S69569:48
  • AF088323:48
  • AF088524:49
  • D32036:50
  • U07138:50
  • AF088709:50
  • AF088781:50
  • AF088790:50
  • U07137:51
  • AF088743:51
  • AF088789:51
  • AB076763:52
  • AB076769:52
  • AF088721:52
  • AF088728:52
  • KM004276:52
  • D31827:53
  • AF088731:53
  • M13867:-221
  • D50744:237
  • AB044117:238
  • AB076752:238
  • AF088726:240
  • AF088730:241
  • AB044123:243
  • AB076767:243
  • AB076782:243
  • L77728:243
  • AF088705:243
  • D50762:243
  • AB076785:244
  • D50755:244
  • KM004279:248
  • L77713:249
  • AF088749:249
  • LT626065:358
view more...
Gene_name:PRSS2
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:25349
Nearest PromoterID:NM_002770
Entrez ID:5645
Nearest Unigene:Hs.449281
Nearest Refseq:NM_002770
Nearest Ensembl:ENSG00000275896
Gene Name:PRSS2
Gene Alias:TRY2|TRY8|TRYP2
Gene Type:protein-coding
CpG%:0.000000
GC%:0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "ENST00000390412.1:44 D50750:44 AF088724:45 AB076766:46 AB076779:46 D32031:46 AF088723:46 AF088782:46 AF088785:46 AF088799:46 AB076750:47 AB076753:47 AB044104:48 AB076758:48 D32034:48 U07135:48 S69569:48 AF088323:48 AF088524:49 D32036:50 U07138:50 AF088709:50 AF088781:50 AF088790:50 U07137:51 AF088743:51 AF088789:51 AB076763:52 AB076769:52 AF088721:52 AF088728:52 KM004276:52 D31827:53 AF088731:53 M13867:-221 D50744:237 AB044117:238 AB076752:238 AF088726:240 AF088730:241 AB044123:243 AB076767:243 AB076782:243 L77728:243 AF088705:243 D50762:243 AB076785:244 D50755:244 KM004279:248 L77713:249 AF088749:249 LT626065:358" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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