TSS: Rfhg 101474.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=MA874388:-200 LY596800:-200 MA874376:-481 LY596788:-481 MA874375:-482 LY596787:-482 MA874374:-487 LY596786:-487 MA874373:-488 LY596785:-488 MA874372:-491 LY596784:-491 MA874371:-492 LY596783:-492 MA874370:-495 LY596782:-495 MA874369:-498 LY596781:-498
|annotation=intron (NM_001130026, intron 10 of 10)
|annotation=intron (NM_001130026, intron 10 of 10)
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=NM_002770
|nearest_promoter_id=NM_002770
|nearest_refseq=NM_002770
|nearest_refseq=NM_002770
|nearest_transcripts=MA874376:-481 LY596788:-481 MA874375:-482 LY596787:-482 MA874374:-487 LY596786:-487 MA874373:-488 LY596785:-488 MA874372:-491 LY596784:-491 MA874371:-492 LY596783:-492 MA874370:-495 LY596782:-495 MA874369:-498 LY596781:-498
|nearest_unigene=Hs.449281
|nearest_unigene=Hs.449281
|peak_score=1
|peak_score=1

Revision as of 15:52, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_101474.1
Species:human
Chr:chr7
Start:142802688
End:142802696
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:MA874388:-200
LY596800:-200
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • MA874376:-481
  • LY596788:-481
  • MA874375:-482
  • LY596787:-482
  • MA874374:-487
  • LY596786:-487
  • MA874373:-488
  • LY596785:-488
  • MA874372:-491
  • LY596784:-491
  • MA874371:-492
  • LY596783:-492
  • MA874370:-495
  • LY596782:-495
  • MA874369:-498
  • LY596781:-498
view more...
Gene_name:PRSS2
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:31722
Nearest PromoterID:NM_002770
Entrez ID:5645
Nearest Unigene:Hs.449281
Nearest Refseq:NM_002770
Nearest Ensembl:ENSG00000275896
Gene Name:PRSS2
Gene Alias:TRY2|TRY8|TRYP2
Gene Type:protein-coding
CpG%:0.000000
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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