TSS: Rfhg 10149.1: Difference between revisions

Revision as of 15:52, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_10149.1
Species:	human
Chr:	chr1

Start:	107056894
End:	107056896
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	KJ902779:-1
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000650338.1:6 BC063446:-50 BC002729:-70 AK001421:-107 BC013866:-110 KJ899088:-178 AY043278:-178 AK226009:-190 AK295541:-190 AK297898:-190 BC073866:-197 ENST00000370078.2:-220 NM_018137.3:-220 view more...

Gene_name:	PRMT6
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	221
Nearest PromoterID:	NM_018137
Entrez ID:	55170
Nearest Unigene:	Hs.26006
Nearest Refseq:	NM_018137
Nearest Ensembl:	ENSG00000198890
Gene Name:	PRMT6
Gene Alias:	HRMT1L6
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=KJ902779:-1 ENST00000650338.1:6 BC063446:-50 BC002729:-70 AK001421:-107 BC013866:-110 KJ899088:-178 AY043278:-178 AK226009:-190 AK295541:-190 AK297898:-190 BC073866:-197 ENST00000370078.2:-220 NM_018137.3:-220
 |annotation=exon (NM_018137, exon 1 of 1)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_018137
 |nearest_refseq=NM_018137
+|nearest_transcripts=ENST00000650338.1:6 BC063446:-50 BC002729:-70 AK001421:-107 BC013866:-110 KJ899088:-178 AY043278:-178 AK226009:-190 AK295541:-190 AK297898:-190 BC073866:-197 ENST00000370078.2:-220 NM_018137.3:-220
 |nearest_unigene=Hs.26006
 |peak_score=1