TSS: Rfhg 101532.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000265310.6:0 NM_019841.7:0 ENST00000442623.1:18 BC034740:18 AF304464:-57 AJ487965:280 KJ902908:281 AJ271207:282 ENST00000439304.5:300 | |||
|annotation=promoter-TSS (NM_019841) | |annotation=promoter-TSS (NM_019841) | ||
|ccre_category=CTCF-only | |ccre_category=CTCF-only | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_019841 | |nearest_promoter_id=NM_019841 | ||
|nearest_refseq=NM_019841 | |nearest_refseq=NM_019841 | ||
|nearest_transcripts=ENST00000442623.1:18 BC034740:18 AF304464:-57 AJ487965:280 KJ902908:281 AJ271207:282 ENST00000439304.5:300 | |||
|nearest_unigene=Hs.283369 | |nearest_unigene=Hs.283369 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000265310.6 | |transcript_name=ENST00000265310.6 NM_019841.7 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_101532.1 | |tss_id=rfhg_101532.1 | ||
Revision as of 15:54, 6 November 2024
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | CTCF-only,CTCF-bound (EH38D4041530,EH38E2597866) |
|---|---|
| Category: | CTCF-only |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_019841 |
| Entrez ID: | 56302 |
| Nearest Unigene: | Hs.283369 |
| Nearest Refseq: | NM_019841 |
| Nearest Ensembl: | ENSG00000127412 |
| Gene Name: | TRPV5 |
| Gene Alias: | CAT2|ECAC1|OTRPC3 |
| Gene Type: | protein-coding |
| CpG%: | 0.100000 |
| GC%: | 0.727273 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.