TSS: Rfhg 101545.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000291009.4:0 NM_002652.3:0 BC010950:0 AK312227:0 Y10179:0 BC010951:0 J03460:9 KJ891812:32 KJ897336:32 | |||
|annotation=promoter-TSS (NM_002652) | |annotation=promoter-TSS (NM_002652) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
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|nearest_promoter_id=NM_002652 | |nearest_promoter_id=NM_002652 | ||
|nearest_refseq=NM_002652 | |nearest_refseq=NM_002652 | ||
|nearest_transcripts=J03460:9 KJ891812:32 KJ897336:32 | |||
|nearest_unigene=Hs.99949 | |nearest_unigene=Hs.99949 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000291009.4 BC010950 AK312227 Y10179 BC010951 | |transcript_name=ENST00000291009.4 NM_002652.3 BC010950 AK312227 Y10179 BC010951 | ||
|tss_cluster_detected=3 | |tss_cluster_detected=3 | ||
|tss_id=rfhg_101545.1 | |tss_id=rfhg_101545.1 | ||
Revision as of 15:54, 6 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|RAMPAGE | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|RAMPAGE | |||||||||||||
| TSS cluster detected* | 3 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D4041686,EH38E2597968) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_002652 |
| Entrez ID: | 5304 |
| Nearest Unigene: | Hs.99949 |
| Nearest Refseq: | NM_002652 |
| Nearest Ensembl: | ENSG00000159763 |
| Gene Name: | PIP |
| Gene Alias: | GCDFP-15|GCDFP15|GPIP4 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.