TSS: Rfhg 101571.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000343257.7:0 NM_000083.3:0 NR_046453.2:0 ENST00000650516.1:10 Z25884:10 LF207106:12 MA442683:12 BC112156:45 BC113495:45 BC143796:45 AB462980:97 BC111586:97 | |||
|annotation=promoter-TSS (NM_000083) | |annotation=promoter-TSS (NM_000083) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_000083 | |nearest_promoter_id=NM_000083 | ||
|nearest_refseq=NM_000083 | |nearest_refseq=NM_000083 | ||
|nearest_transcripts=ENST00000650516.1:10 Z25884:10 LF207106:12 MA442683:12 BC112156:45 BC113495:45 BC143796:45 AB462980:97 BC111586:97 | |||
|nearest_unigene=Hs.121483 | |nearest_unigene=Hs.121483 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000343257.7 | |transcript_name=ENST00000343257.7 NM_000083.3 NR_046453.2 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_101571.1 | |tss_id=rfhg_101571.1 | ||
Revision as of 15:55, 6 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|EPD | |||||||||||||
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| Protocol | CAGE|TSS_database | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_000083 |
| Entrez ID: | 1180 |
| Nearest Unigene: | Hs.121483 |
| Nearest Refseq: | NM_000083 |
| Nearest Ensembl: | ENSG00000188037 |
| Gene Name: | CLCN1 |
| Gene Alias: | CLC1 |
| Gene Type: | protein-coding |
| CpG%: | 0.100000 |
| GC%: | 0.818182 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.