TSS: Rfhg 101598.1: Difference between revisions

Revision as of 15:56, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_101598.1
Species:	human
Chr:	chr7

Start:	143382580
End:	143382591
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_106952.1:95 LQ724423:95
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LQ724611:189 BC021069:-198 AK130138:242 ENST00000436448.1:259 U15158:-303 ENST00000446634.1:409 view more...

Gene_name:	MIR6892
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-101
Nearest PromoterID:	NR_106952
Entrez ID:	102465538
Nearest Unigene:
Nearest Refseq:	NR_106952
Nearest Ensembl:	ENSG00000278449
Gene Name:	MIR6892
Gene Alias:	hsa-mir-6892
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_106952.1:95 LQ724423:95 LQ724611:189 BC021069:-198 AK130138:242 ENST00000436448.1:259 U15158:-303 ENST00000446634.1:409
 |annotation=promoter-TSS (NR_106952)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_106952
 |nearest_refseq=NR_106952
+|nearest_transcripts=LQ724611:189 BC021069:-198 AK130138:242 ENST00000436448.1:259 U15158:-303 ENST00000446634.1:409
 |nearest_unigene=
 |peak_score=1