TSS: Rfhg 101599.1: Difference between revisions
From referenceTSS
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000612346.1:37 NR_106952.1:37 LQ724423:37 LQ724611:131 AK130138:184 ENST00000436448.1:201 BC021069:-213 U15158:-318 ENST00000446634.1:351 | |||
|annotation=promoter-TSS (NR_106952) | |annotation=promoter-TSS (NR_106952) | ||
|ccre_category=N | |ccre_category=N | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_106952 | |nearest_promoter_id=NR_106952 | ||
|nearest_refseq=NR_106952 | |nearest_refseq=NR_106952 | ||
|nearest_transcripts=LQ724611:131 AK130138:184 ENST00000436448.1:201 BC021069:-213 U15158:-318 ENST00000446634.1:351 | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000612346.1 | |transcript_name=ENST00000612346.1 NR_106952.1 LQ724423 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_101599.1 | |tss_id=rfhg_101599.1 | ||
Revision as of 15:56, 6 November 2024
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -64 |
|---|---|
| Nearest PromoterID: | NR_106952 |
| Entrez ID: | 102465538 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_106952 |
| Nearest Ensembl: | ENSG00000278449 |
| Gene Name: | MIR6892 |
| Gene Alias: | hsa-mir-6892 |
| Gene Type: | ncRNA |
| CpG%: | 0.018519 |
| GC%: | 0.509091 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.