TSS: Rfhg 101660.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000467773.1:-24 ENST00000483238.5:-24 NM_001080413.3:-24 BC152834:-25 AB528776:-25 | |||
|annotation=promoter-TSS (NM_001080413).2 | |annotation=promoter-TSS (NM_001080413).2 | ||
|ccre_category=N | |ccre_category=N | ||
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|nearest_promoter_id=NM_001080413 | |nearest_promoter_id=NM_001080413 | ||
|nearest_refseq=NM_001080413 | |nearest_refseq=NM_001080413 | ||
|nearest_transcripts=BC152834:-25 AB528776:-25 | |||
|nearest_unigene=Hs.558628 | |nearest_unigene=Hs.558628 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000467773.1 ENST00000483238.5 | |transcript_name=ENST00000467773.1 ENST00000483238.5 NM_001080413.3 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_101660.1 | |tss_id=rfhg_101660.1 | ||
Revision as of 15:59, 6 November 2024
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_001080413 |
| Entrez ID: | 135935 |
| Nearest Unigene: | Hs.558628 |
| Nearest Refseq: | NM_001080413 |
| Nearest Ensembl: | ENSG00000106410 |
| Gene Name: | NOBOX |
| Gene Alias: | OG-2|OG2|OG2X|POF5|TCAG_12042 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.