TSS: Rfhg 101780.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000364228.1:0 NR_004391.1:0 K01562:0 | |||
|annotation=promoter-TSS (NR_130107) | |annotation=promoter-TSS (NR_130107) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NR_004391 | |nearest_promoter_id=NR_004391 | ||
|nearest_refseq=NR_004391 | |nearest_refseq=NR_004391 | ||
|nearest_transcripts= | |||
|nearest_unigene= | |nearest_unigene= | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000364228.1 | |transcript_name=ENST00000364228.1 NR_004391.1 K01562 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_101780.1 | |tss_id=rfhg_101780.1 | ||
Revision as of 16:04, 6 November 2024
Basic information about the TSS
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| Source datasets | PRJNA548673 | |||||||||||||
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| Protocol | ReCappable-seq | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4044995,EH38E2599786) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NR_004391 |
| Entrez ID: | 6084 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_004391 |
| Nearest Ensembl: | ENSG00000201098 |
| Gene Name: | RNY1 |
| Gene Alias: | HY1|Y1 |
| Gene Type: | ncRNA |
| CpG%: | 0.025974 |
| GC%: | 0.435897 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.