TSS: Rfhg 101795.1: Difference between revisions

Revision as of 16:04, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_101795.1
Species:	human
Chr:	chr7

Start:	149126267
End:	149126279
Strand:	-

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4045109,EH38E2599872)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	AK125575:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	BC125189:-6 AY621067:-7 AK056498:-7 ENST00000483014.1:-27 ENST00000378061.7:-45 NM_001001661.3:-45 ENST00000488398.3:281 view more...

Gene_name:	ZNF425
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	51
Nearest PromoterID:	NM_001001661
Entrez ID:	155054
Nearest Unigene:	Hs.31743
Nearest Refseq:	NM_001001661
Nearest Ensembl:	ENSG00000204947
Gene Name:	ZNF425
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.615385
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=AK125575:0 BC125189:-6 AY621067:-7 AK056498:-7 ENST00000483014.1:-27 ENST00000378061.7:-45 NM_001001661.3:-45 ENST00000488398.3:281
 |annotation=promoter-TSS (NM_020781)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001001661
 |nearest_refseq=NM_001001661
+|nearest_transcripts=BC125189:-6 AY621067:-7 AK056498:-7 ENST00000483014.1:-27 ENST00000378061.7:-45 NM_001001661.3:-45 ENST00000488398.3:281
 |nearest_unigene=Hs.31743
 |peak_score=1