TSS: Rfhg 101796.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000378061.7:0 ENST00000483014.1:0 NM_001001661.3:0 AY621067:10 AK056498:10 BC125189:11 AK125575:19 ENST00000488398.3:310 | |||
|annotation=promoter-TSS (NM_020781) | |annotation=promoter-TSS (NM_020781) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001001661 | |nearest_promoter_id=NM_001001661 | ||
|nearest_refseq=NM_001001661 | |nearest_refseq=NM_001001661 | ||
|nearest_transcripts=AY621067:10 AK056498:10 BC125189:11 AK125575:19 ENST00000488398.3:310 | |||
|nearest_unigene=Hs.31743 | |nearest_unigene=Hs.31743 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000378061.7 ENST00000483014.1 | |transcript_name=ENST00000378061.7 ENST00000483014.1 NM_001001661.3 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_101796.1 | |tss_id=rfhg_101796.1 | ||
Revision as of 16:04, 6 November 2024
Basic information about the TSS
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| Source datasets | PRJNA597322 | |||||||||||||
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| Protocol | STRIPE-seq | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4045109,EH38E2599872) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001001661 |
| Entrez ID: | 155054 |
| Nearest Unigene: | Hs.31743 |
| Nearest Refseq: | NM_001001661 |
| Nearest Ensembl: | ENSG00000204947 |
| Gene Name: | ZNF425 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.115385 |
| GC%: | 0.773585 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.