TSS: Rfhg 103602.1: Difference between revisions

Revision as of 17:16, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_103602.1
Species:	human
Chr:	chr8

Start:	11847813
End:	11847814
Strand:	+

Source datasets

DRA013844

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4062584,EH38E2611203)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	DQ577326:-256
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CTSB
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	20274
Nearest PromoterID:	NM_001317237
Entrez ID:	1508
Nearest Unigene:	Hs.520898
Nearest Refseq:	NM_001908
Nearest Ensembl:	ENSG00000164733
Gene Name:	CTSB
Gene Alias:	APPS\|CPSB\|RECEUP
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=DQ577326:-256
 |annotation=exon (NM_001317237, exon 7 of 10)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001317237
 |nearest_refseq=NM_001908
+|nearest_transcripts=
 |nearest_unigene=Hs.520898
 |peak_score=1