TSS: Rfhg 103668.1: Difference between revisions

Revision as of 17:18, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_103668.1
Species:	human
Chr:	chr8

Start:	12797054
End:	12797056
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D4062993,EH38E2611455)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC00681
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	2815
Nearest PromoterID:	NR_102423
Entrez ID:	101409254
Nearest Unigene:	Hs.571476
Nearest Refseq:	NR_102423
Nearest Ensembl:	ENSG00000255494
Gene Name:	LINC00681
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NR_102423, intron 1 of 1)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_102423
 |nearest_refseq=NR_102423
+|nearest_transcripts=
 |nearest_unigene=Hs.571476
 |peak_score=1