TSS: Rfhg 10495.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000486823.5:0 AK304300:0 AK313444:0 AB209816:4 ENST00000540225.2:6 EF363096:6 J05459:6 BC000088:8 GQ891462:8 ENST00000488824.1:9 DQ891834:19 EU176637:19 AB527634:21 KJ891309:22 KJ896939:22 CR542108:23 BT019945:23 LF206297:-70 MA441874:-70 LF211920:-98 MA447497:-98 ENST00000256594.7:-156 LF353051:428 MA588628:428
|annotation=non-coding (NR_024537, exon 2 of 8)
|annotation=non-coding (NR_024537, exon 2 of 8)
|ccre_category=PLS
|ccre_category=PLS
Line 25: Line 26:
|nearest_promoter_id=NR_024537
|nearest_promoter_id=NR_024537
|nearest_refseq=NM_000849
|nearest_refseq=NM_000849
|nearest_transcripts=AB209816:4 ENST00000540225.2:6 EF363096:6 J05459:6 BC000088:8 GQ891462:8 ENST00000488824.1:9 DQ891834:19 EU176637:19 AB527634:21 KJ891309:22 KJ896939:22 CR542108:23 BT019945:23 LF206297:-70 MA441874:-70 LF211920:-98 MA447497:-98 ENST00000256594.7:-156 LF353051:428 MA588628:428
|nearest_unigene=Hs.2006
|nearest_unigene=Hs.2006
|peak_score=1
|peak_score=1

Revision as of 18:20, 6 November 2024

Basic information about the TSS

TSS ID:rfhg_10495.1
TSS ID(Version3):hg_13721.1
Species:human
Chr:chr1
Start:109740310
End:109740360
Strand:-
Source datasetsFANTOM5|DBTSS|DRA000914|ENCODE|PRJNA615891|PRJNA401781
|PRJNA4843412|PRJNA548673|DRA013844|PRJDB5282
ProtocolCAGE|TSS-seq|TIF-seq2|SLIC_CAGE|RAMPAGE|NETCAGE
|oligo_capping|ReCappable-seq|C1CAGE
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2209187,EH38E1375066)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000486823.5:0
AK304300:0
AK313444:0
GeneID:2947
HGNC/MGI_ID:HGNC:4635
UniProt_ID:B4E2J2
Nearer transcript ids and distances:
  • AB209816:4
  • ENST00000540225.2:6
  • EF363096:6
  • J05459:6
  • BC000088:8
  • GQ891462:8
  • ENST00000488824.1:9
  • DQ891834:19
  • EU176637:19
  • AB527634:21
  • KJ891309:22
  • KJ896939:22
  • CR542108:23
  • BT019945:23
  • LF206297:-70
  • MA441874:-70
  • LF211920:-98
  • MA447497:-98
  • ENST00000256594.7:-156
  • LF353051:428
  • MA588628:428
view more...
Gene_name:GSTM3
Gene_symbol:GSTM3
Gene_synonyms:GST5
Gene_source:HGNC:4635



TATA-Box annotation

Distance to TSS:703
Nearest PromoterID:NR_024537
Entrez ID:2947
Nearest Unigene:Hs.2006
Nearest Refseq:NM_000849
Nearest Ensembl:ENSG00000134202
Gene Name:GSTM3
Gene Alias:GST5|GSTB|GSTM3-3|GTM3
Gene Type:protein-coding
CpG%:0.040000
GC%:0.568627
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "AB209816:4 ENST00000540225.2:6 EF363096:6 J05459:6 BC000088:8 GQ891462:8 ENST00000488824.1:9 DQ891834:19 EU176637:19 AB527634:21 KJ891309:22 KJ896939:22 CR542108:23 BT019945:23 LF206297:-70 MA441874:-70 LF211920:-98 MA447497:-98 ENST00000256594.7:-156 LF353051:428 MA588628:428" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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