TSS: Rfhg 10645.1: Difference between revisions

Revision as of 19:26, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_10645.1
Species:	human
Chr:	chr1

Start:	110480740
End:	110480744
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000474680.5:8
GeneID:	643160
HGNC/MGI_ID:	HGNC:2588
UniProt_ID:
Nearer transcript ids and distances:	NR_003599.2:22

Gene_name:	CYMP
Gene_symbol:	CYMP
Gene_synonyms:
Gene_source:	HGNC:2588

TATA-Box annotation

Distance to TSS:	-24
Nearest PromoterID:	NR_003599
Entrez ID:	643160
Nearest Unigene:	Hs.532720
Nearest Refseq:	NR_003599
Nearest Ensembl:	ENSG00000240194
Gene Name:	CYMP
Gene Alias:	-
Gene Type:	pseudo
CpG%:	0.000000
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000474680.5:8 NR_003599.2:22
 |annotation=promoter-TSS (NR_003599)
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_003599
 |nearest_refseq=NR_003599
+|nearest_transcripts=NR_003599.2:22
 |nearest_unigene=Hs.532720
 |peak_score=1