TSS: Rfhg 108300.1: Difference between revisions

Revision as of 20:43, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_108300.1
Species:	human
Chr:	chr8

Start:	82033765
End:	82033775
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000659043.1:5
GeneID:	101927141
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000663058.1:-232

Gene_name:	SNX16
Gene_symbol:	LOC101927141
Gene_synonyms:
Gene_source:	EntrezGene:101927141

TATA-Box annotation

Distance to TSS:	-191484
Nearest PromoterID:	NM_022133
Entrez ID:	64089
Nearest Unigene:	Hs.492121
Nearest Refseq:	NM_022133
Nearest Ensembl:	ENSG00000104497
Gene Name:	SNX16
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.454545
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000659043.1:5 ENST00000663058.1:-232
 |annotation=Intergenic
 |ccre_category=N
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_022133
 |nearest_refseq=NM_022133
+|nearest_transcripts=ENST00000663058.1:-232
 |nearest_unigene=Hs.492121
 |peak_score=1