TSS: Rfhg 110908.1: Difference between revisions

Revision as of 22:38, 6 November 2024

Basic information about the TSS

TSS ID:	rfhg_110908.1
Species:	human
Chr:	chr8

Start:	127793969
End:	127793997
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4147715,EH38E2666244)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PVT1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-550
Nearest PromoterID:	NR_003367
Entrez ID:	5820
Nearest Unigene:	Hs.133107
Nearest Refseq:	NR_003367
Nearest Ensembl:	ENSG00000249859
Gene Name:	PVT1
Gene Alias:	LINC00079\|MIR1204HG\|NCRNA00079\|onco-lncRNA-100
Gene Type:	ncRNA
CpG%:	0.035714
GC%:	0.586207
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=promoter-TSS (NR_003367)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_003367
 |nearest_refseq=NR_003367
+|nearest_transcripts=
 |nearest_unigene=Hs.133107
 |peak_score=1