TSS: Rfhg 113948.1: Difference between revisions

Revision as of 00:47, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_113948.1
TSS ID(Version3):	hg_96272.1 hg_96271.1
Species:	human
Chr:	chr9

Start:	20684249
End:	20684291
Strand:	+

Source datasets

Protocol

TSS cluster detected^*

10

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4178823,EH38E2686554)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001375570.1:0 NM_001375568.1:0 NM_001375567.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000604036.1:-271

Gene_name:	FOCAD-AS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	480
Nearest PromoterID:	NR_121601
Entrez ID:	101929548
Nearest Unigene:	Hs.668302
Nearest Refseq:	NR_121601
Nearest Ensembl:	ENSG00000227071
Gene Name:	FOCAD-AS1
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.071429
GC%:	0.697674
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001375570.1:0 NM_001375568.1:0 NM_001375567.1:0 ENST00000604036.1:-271
 |annotation=intron (NR_121601, intron 1 of 1)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_121601
 |nearest_refseq=NR_121601
+|nearest_transcripts=ENST00000604036.1:-271
 |nearest_unigene=Hs.668302
 |peak_score=1