TSS: Rfhg 113978.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000380205.2:0 NM_002170.4:0 K01900:15 BC104828:29 BC104830:29 V00545:31 V00550:31 KJ891433:58 | |||
|annotation=promoter-TSS (NM_002170) | |annotation=promoter-TSS (NM_002170) | ||
|ccre_category=N | |ccre_category=N | ||
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|nearest_promoter_id=NM_002170 | |nearest_promoter_id=NM_002170 | ||
|nearest_refseq=NM_002170 | |nearest_refseq=NM_002170 | ||
|nearest_transcripts=K01900:15 BC104828:29 BC104830:29 V00545:31 V00550:31 KJ891433:58 | |||
|nearest_unigene=Hs.73890 | |nearest_unigene=Hs.73890 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000380205.2 | |transcript_name=ENST00000380205.2 NM_002170.4 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_113978.1 | |tss_id=rfhg_113978.1 | ||
Revision as of 00:48, 7 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
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| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_002170 |
| Entrez ID: | 3445 |
| Nearest Unigene: | Hs.73890 |
| Nearest Refseq: | NM_002170 |
| Nearest Ensembl: | ENSG00000120242 |
| Gene Name: | IFNA8 |
| Gene Alias: | IFN-alphaB |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.333333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.