TSS: Rfhg 114026.1: Difference between revisions

Revision as of 00:50, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_114026.1
Species:	human
Chr:	chr9

Start:	21965308
End:	21965325
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4179803,EH38E2687242)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CDKN2A-DT
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1823
Nearest PromoterID:	NR_024274
Entrez ID:	51198
Nearest Unigene:	Hs.721053
Nearest Refseq:	NM_016349
Nearest Ensembl:
Gene Name:	CDKN2A-DT
Gene Alias:	C9orf53\|CDKN2A-AS1\|bA149I2.3
Gene Type:	ncRNA
CpG%:	0.058824
GC%:	0.611111
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=Intergenic
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_024274
 |nearest_refseq=NM_016349
+|nearest_transcripts=
 |nearest_unigene=Hs.721053
 |peak_score=1