TSS: Rfhg 115595.1: Difference between revisions

Revision as of 01:54, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_115595.1
Species:	human
Chr:	chr9

Start:	72521692
End:	72521692
Strand:	+

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D4195388,EH38E2696859)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000643676.1:-84 ENST00000297784.10:-84 NM_138691.3:-84
GeneID:	117531
HGNC/MGI_ID:	HGNC:16513
UniProt_ID:	Q8TDI8
Nearer transcript ids and distances:	AF417578:109

Gene_name:	TMC1
Gene_symbol:	TMC1
Gene_synonyms:
Gene_source:	HGNC:16513

TATA-Box annotation

Distance to TSS:	-109
Nearest PromoterID:	NM_138691
Entrez ID:	117531
Nearest Unigene:	Hs.670211
Nearest Refseq:	NM_138691
Nearest Ensembl:	ENSG00000165091
Gene Name:	TMC1
Gene Alias:	DFNA36\|DFNB11\|DFNB7
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	1.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000643676.1:-84 ENST00000297784.10:-84 NM_138691.3:-84 AF417578:109
 |annotation=promoter-TSS (NM_138691)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_138691
 |nearest_refseq=NM_138691
+|nearest_transcripts=AF417578:109
 |nearest_unigene=Hs.670211
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000643676.1 ENST00000297784.10
+|transcript_name=ENST00000643676.1 ENST00000297784.10 NM_138691.3
 |tss_cluster_detected=1
 |tss_id=rfhg_115595.1