TSS: Rfhg 11627.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000488031.6:0 ENST00000584793.6:0 ENST00000584575.2:0 NM_001385426.1:0 NM_001385414.1:0 NM_001385425.1:0 NM_001385430.1:0 NM_001385444.1:0 NM_001385411.1:0 NM_001385428.1:0 NM_001385378.1:0 NM_001385436.1:0 NM_001385406.1:0 NM_001385437.1:0 NM_001385422.1:0 NM_001385408.1:0 NM_001385442.1:0 NM_001385431.1:0 NM_001170755.3:0 NM_001385435.1:0 NM_001385373.1:0 NM_001385415.1:0 NM_001385418.1:0 NM_001385429.1:0 NM_001385441.1:0 NM_001385440.1:0 NM_001385434.1:0 NM_001385423.1:0 NM_001385419.1:0 NM_001385375.1:0 NM_001385409.1:0 NM_001385445.1:0 NM_001385412.1:0 NM_001385404.1:0 NM_001385420.1:0 NM_173638.5:0 NM_001385433.1:0 NM_001385407.1:0 NM_001385410.1:0 NM_001385424.1:0 NM_001385421.1:0 NM_001385403.1:0 NM_001385376.1:0 NM_001385427.1:0 NM_001385413.1:0 NM_001385439.1:0 NM_001385432.1:0 NM_001385446.1:0 NM_001385405.1:0 NM_001385447.1:0 NM_001385448.1:0 NM_001385417.1:0 NM_001385438.1:0 NM_001385374.1:0 NM_001385443.1:0 NM_001385377.1:0 NM_001385416.1:0 ENST00000478419.5:8 ENST00000579734.6:41 | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=PLS | |ccre_category=PLS | ||
| Line 25: | Line 26: | ||
|nearest_promoter_id=NM_001170755 | |nearest_promoter_id=NM_001170755 | ||
|nearest_refseq=NM_173638 | |nearest_refseq=NM_173638 | ||
|nearest_transcripts=ENST00000478419.5:8 ENST00000579734.6:41 | |||
|nearest_unigene=Hs.523572 | |nearest_unigene=Hs.523572 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000488031.6 ENST00000584793.6 ENST00000584575.2 | |transcript_name=ENST00000488031.6 ENST00000584793.6 ENST00000584575.2 NM_001385426.1 NM_001385414.1 NM_001385425.1 NM_001385430.1 NM_001385444.1 NM_001385411.1 NM_001385428.1 NM_001385378.1 NM_001385436.1 NM_001385406.1 NM_001385437.1 NM_001385422.1 NM_001385408.1 NM_001385442.1 NM_001385431.1 NM_001170755.3 NM_001385435.1 NM_001385373.1 NM_001385415.1 NM_001385418.1 NM_001385429.1 NM_001385441.1 NM_001385440.1 NM_001385434.1 NM_001385423.1 NM_001385419.1 NM_001385375.1 NM_001385409.1 NM_001385445.1 NM_001385412.1 NM_001385404.1 NM_001385420.1 NM_173638.5 NM_001385433.1 NM_001385407.1 NM_001385410.1 NM_001385424.1 NM_001385421.1 NM_001385403.1 NM_001385376.1 NM_001385427.1 NM_001385413.1 NM_001385439.1 NM_001385432.1 NM_001385446.1 NM_001385405.1 NM_001385447.1 NM_001385448.1 NM_001385417.1 NM_001385438.1 NM_001385374.1 NM_001385443.1 NM_001385377.1 NM_001385416.1 | ||
|tss_cluster_detected=4 | |tss_cluster_detected=4 | ||
|tss_id=rfhg_11627.1 | |tss_id=rfhg_11627.1 | ||
Revision as of 02:17, 7 November 2024
Basic information about the TSS
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| Source datasets | FANTOM5|PRJDB5282|PRJNA4843412|DRA013844 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|C1CAGE|NETCAGE | |||||||||||||||
| TSS cluster detected* | 4 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2218932,EH38E1382010) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -2175 |
|---|---|
| Nearest PromoterID: | NM_001170755 |
| Entrez ID: | 284565 |
| Nearest Unigene: | Hs.523572 |
| Nearest Refseq: | NM_173638 |
| Nearest Ensembl: | ENSG00000266338 |
| Gene Name: | NBPF15 |
| Gene Alias: | AB14|AG3|NBPF16 |
| Gene Type: | protein-coding |
| CpG%: | 0.098765 |
| GC%: | 0.756098 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.