TSS: Rfhg 116275.1: Difference between revisions

Revision as of 02:17, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_116275.1
Species:	human
Chr:	chr9

Start:	86947646
End:	86947697
Strand:	-

Source datasets

PRJNA4843412|DRA013844

Protocol

NETCAGE|CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D4206242,EH38E2703669)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF209815:0 MA445392:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000298743.9:140 NM_002048.3:140 LF214003:140 MA449580:140 LF212539:-321 MA448116:-321 L13698:457 view more...

Gene_name:	GAS1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-165
Nearest PromoterID:	NM_002048
Entrez ID:	2619
Nearest Unigene:	Hs.65029
Nearest Refseq:	NM_002048
Nearest Ensembl:	ENSG00000180447
Gene Name:	GAS1
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.117647
GC%:	0.692308
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF209815:0 MA445392:0 ENST00000298743.9:140 NM_002048.3:140 LF214003:140 MA449580:140 LF212539:-321 MA448116:-321 L13698:457
 |annotation=promoter-TSS (NM_002048)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_002048
 |nearest_refseq=NM_002048
+|nearest_transcripts=ENST00000298743.9:140 NM_002048.3:140 LF214003:140 MA449580:140 LF212539:-321 MA448116:-321 L13698:457
 |nearest_unigene=Hs.65029
 |peak_score=1