TSS: Rfhg 116984.1: Difference between revisions

Revision as of 02:47, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_116984.1
Species:	human
Chr:	chr9

Start:	95086086
End:	95086088
Strand:	+

Source datasets

FANTOM5|ENCODE

Protocol

CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4214140,EH38E2709459)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF132475:-59 LF137834:-59 LF160855:-59 LF162799:-59 LF953551:-59 LG005896:-59 LG053592:-59 LG162339:-59 LG240831:-59 LP726985:-59 LP819255:-59 LP939197:-59 LQ070251:-59 LV470916:-59 LX146815:-59 LY405128:-59 LZ233829:-59 MA260367:-59 MA643752:-59 MA731636:-59 MP075709:-59 MS673365:-59 MS816874:-59 MS833347:-59 MS834382:-59 MS901721:-59 MA800805:-59 MP129606:-59 MP162529:-59 MP272061:-59
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LQ071329:-62 MA644830:-62 MA732714:-62 MA801883:-62 NR_029496.1:-65 LF132446:-65 LF714573:-65 LF714765:-65 LF856507:-65 LF856699:-65 LG051544:-65 LG162310:-65 LQ654719:-65 LQ654750:-65 LY480978:-65 LY495860:-65 LY496817:-65 LY497202:-65 LY498517:-65 LZ238803:-65 MS869025:-65 MS884389:-65 MS994825:-65 MA806282:-65 MA822722:-65 LY616567:-65 MB473073:-65 LF714766:-66 LF856700:-66 AF043896:-117 view more...

Gene_name:	MIR3074
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	7
Nearest PromoterID:	NR_036109
Entrez ID:	100422842
Nearest Unigene:
Nearest Refseq:	NR_036109
Nearest Ensembl:	ENSG00000207617
Gene Name:	MIR3074
Gene Alias:	mir-3074
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

Property "Nearest transcripts" (as page type) with input value "LQ071329:-62 MA644830:-62 MA732714:-62 MA801883:-62 NR_029496.1:-65 LF132446:-65 LF714573:-65 LF714765:-65 LF856507:-65 LF856699:-65 LG051544:-65 LG162310:-65 LQ654719:-65 LQ654750:-65 LY480978:-65 LY495860:-65 LY496817:-65 LY497202:-65 LY498517:-65 LZ238803:-65 MS869025:-65 MS884389:-65 MS994825:-65 MA806282:-65 MA822722:-65 LY616567:-65 MB473073:-65 LF714766:-66 LF856700:-66 AF043896:-117" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF132475:-59 LF137834:-59 LF160855:-59 LF162799:-59 LF953551:-59 LG005896:-59 LG053592:-59 LG162339:-59 LG240831:-59 LP726985:-59 LP819255:-59 LP939197:-59 LQ070251:-59 LV470916:-59 LX146815:-59 LY405128:-59 LZ233829:-59 MA260367:-59 MA643752:-59 MA731636:-59 MP075709:-59 MS673365:-59 MS816874:-59 MS833347:-59 MS834382:-59 MS901721:-59 MA800805:-59 MP129606:-59 MP162529:-59 MP272061:-59 LQ071329:-62 MA644830:-62 MA732714:-62 MA801883:-62 NR_029496.1:-65 LF132446:-65 LF714573:-65 LF714765:-65 LF856507:-65 LF856699:-65 LG051544:-65 LG162310:-65 LQ654719:-65 LQ654750:-65 LY480978:-65 LY495860:-65 LY496817:-65 LY497202:-65 LY498517:-65 LZ238803:-65 MS869025:-65 MS884389:-65 MS994825:-65 MA806282:-65 MA822722:-65 LY616567:-65 MB473073:-65 LF714766:-66 LF856700:-66 AF043896:-117
 |annotation=promoter-TSS (NR_029496)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_036109
 |nearest_refseq=NR_036109
+|nearest_transcripts=LQ071329:-62 MA644830:-62 MA732714:-62 MA801883:-62 NR_029496.1:-65 LF132446:-65 LF714573:-65 LF714765:-65 LF856507:-65 LF856699:-65 LG051544:-65 LG162310:-65 LQ654719:-65 LQ654750:-65 LY480978:-65 LY495860:-65 LY496817:-65 LY497202:-65 LY498517:-65 LZ238803:-65 MS869025:-65 MS884389:-65 MS994825:-65 MA806282:-65 MA822722:-65 LY616567:-65 MB473073:-65 LF714766:-66 LF856700:-66 AF043896:-117
 |nearest_unigene=
 |peak_score=1