TSS: Rfhg 11892.1: Difference between revisions

Revision as of 04:16, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_11892.1
Species:	human
Chr:	chr1

Start:	147648569
End:	147648574
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS,CTCF-bound (EH38D2220055,EH38E1382750)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF352683:152 MA588260:152
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF352684:-272 MA588261:-272 LF352682:390 MA588259:390 view more...

Gene_name:	ACP6
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	21953
Nearest PromoterID:	NR_136635
Entrez ID:	51205
Nearest Unigene:	Hs.562154
Nearest Refseq:	NM_016361
Nearest Ensembl:	ENSG00000162836
Gene Name:	ACP6
Gene Alias:	ACPL1\|LPAP\|PACPL1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF352683:152 MA588260:152 LF352684:-272 MA588261:-272 LF352682:390 MA588259:390
 |annotation=intron (NR_136634, intron 9 of 9)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_136635
 |nearest_refseq=NM_016361
+|nearest_transcripts=LF352684:-272 MA588261:-272 LF352682:390 MA588259:390
 |nearest_unigene=Hs.562154
 |peak_score=1