TSS: Rfhg 119668.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000373078.5:0 NM_197956.4:0 AK122729:0 DQ600055:62 BC021580:144 AL833392:198 KJ905037:208 | |||
|annotation=promoter-TSS (NM_197956) | |annotation=promoter-TSS (NM_197956) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_197956 | |nearest_promoter_id=NM_197956 | ||
|nearest_refseq=NM_197956 | |nearest_refseq=NM_197956 | ||
|nearest_transcripts=DQ600055:62 BC021580:144 AL833392:198 KJ905037:208 | |||
|nearest_unigene=Hs.373606 | |nearest_unigene=Hs.373606 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000373078.5 AK122729 | |transcript_name=ENST00000373078.5 NM_197956.4 AK122729 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_119668.1 | |tss_id=rfhg_119668.1 | ||
Revision as of 04:49, 7 November 2024
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
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| Protocol | NETCAGE|CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4242315,EH38E2729191) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -13 |
|---|---|
| Nearest PromoterID: | NM_197956 |
| Entrez ID: | 203245 |
| Nearest Unigene: | Hs.373606 |
| Nearest Refseq: | NM_197956 |
| Nearest Ensembl: | ENSG00000171169 |
| Gene Name: | NAIF1 |
| Gene Alias: | C9orf90|bA379C10.2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085106 |
| GC%: | 0.604167 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.