TSS: Rfhg 121172.1: Difference between revisions

Revision as of 05:53, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_121172.1
Species:	human
Chr:	chr9

Start:	136118987
End:	136119054
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4251909,EH38E2736369)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NR_165241.1:0 NR_165240.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TMEM250
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-145
Nearest PromoterID:	NR_134506
Entrez ID:	90120
Nearest Unigene:	Hs.287411
Nearest Refseq:	NM_152833
Nearest Ensembl:	ENSG00000238227
Gene Name:	TMEM250
Gene Alias:	C9orf69
Gene Type:	protein-coding
CpG%:	0.149254
GC%:	0.705882
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NR_165241.1:0 NR_165240.1:0
 |annotation=promoter-TSS (NM_152833)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_134506
 |nearest_refseq=NM_152833
+|nearest_transcripts=
 |nearest_unigene=Hs.287411
 |peak_score=1