TSS: Rfhg 121323.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000414282.5:0 ENST00000653276.1:0 ENST00000416970.5:0 ENST00000447221.1:0 NR_024542.1:0 NR_024543.1:0 NR_003672.2:0 AK054908:0 BC042369:0 BC042667:0 AK090585:0 BC059956:7 BC055011:8 BC061888:27 ENST00000668354.1:270
|annotation=promoter-TSS (NR_024542)
|annotation=promoter-TSS (NR_024542)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NR_003672
|nearest_promoter_id=NR_003672
|nearest_refseq=NR_003672
|nearest_refseq=NR_003672
|nearest_transcripts=BC059956:7 BC055011:8 BC061888:27 ENST00000668354.1:270
|nearest_unigene=Hs.495480
|nearest_unigene=Hs.495480
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000414282.5 ENST00000653276.1 ENST00000416970.5 ENST00000447221.1 AK054908 BC042369 BC042667 AK090585
|transcript_name=ENST00000414282.5 ENST00000653276.1 ENST00000416970.5 ENST00000447221.1 NR_024542.1 NR_024543.1 NR_003672.2 AK054908 BC042369 BC042667 AK090585
|tss_cluster_detected=6
|tss_cluster_detected=6
|tss_id=rfhg_121323.1
|tss_id=rfhg_121323.1

Revision as of 05:58, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_121323.1
Species:human
Chr:chr9
Start:136728175
End:136728191
Strand:-
Source datasetsPRJNA548673|PRJNA615891|PRJNA4843412|DRA013844
ProtocolCAGE|ReCappable-seq|SLIC_CAGE|TIF-seq2|NETCAGE
TSS cluster detected*6

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D4252716,EH38E2737076)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000414282.5:0
ENST00000653276.1:0
ENST00000416970.5:0
ENST00000447221.1:0
NR_024542.1:0
NR_024543.1:0
NR_003672.2:0
AK054908:0
BC042369:0
BC042667:0
AK090585:0
GeneID:677824 84973
HGNC/MGI_ID:HGNC:28254 HGNC:32636
UniProt_ID:
Nearer transcript ids and distances:
  • BC059956:7
  • BC055011:8
  • BC061888:27
  • ENST00000668354.1:270
view more...
Gene_name:SNHG7
Gene_symbol:SNHG7 SNORA17B
Gene_synonyms:ACA43 MGC16037 NCRNA00061
Gene_source:HGNC:28254 HGNC:32636



TATA-Box annotation

Distance to TSS:1
Nearest PromoterID:NR_003672
Entrez ID:84973
Nearest Unigene:Hs.495480
Nearest Refseq:NR_003672
Nearest Ensembl:ENSG00000233016
Gene Name:SNHG7
Gene Alias:NCRNA00061
Gene Type:ncRNA
CpG%:0.125000
GC%:0.647059
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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