TSS: Rfhg 121613.1: Difference between revisions

Revision as of 06:15, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_121613.1
Species:	human
Chr:	chr9

Start:	137221333
End:	137221333
Strand:	-

Source datasets

EPD

Protocol

TSS_database

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D4253415,EH38E2737700)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000391553.2:10
GeneID:	727800
HGNC/MGI_ID:	HGNC:25420
UniProt_ID:	Q9H0X6
Nearer transcript ids and distances:	ENST00000392827.2:-248 AL136540:327 AF416715:329 BC016958:349 AM393547:363 view more...

Gene_name:	RNF208
Gene_symbol:	RNF208
Gene_synonyms:	DKFZP761H1710
Gene_source:	HGNC:25420

TATA-Box annotation

Distance to TSS:	-10
Nearest PromoterID:	NM_031297
Entrez ID:	727800
Nearest Unigene:	Hs.512767
Nearest Refseq:	NM_031297
Nearest Ensembl:	ENSG00000212864
Gene Name:	RNF208
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000391553.2:10 ENST00000392827.2:-248 AL136540:327 AF416715:329 BC016958:349 AM393547:363
 |annotation=promoter-TSS (NM_031297)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_031297
 |nearest_refseq=NM_031297
+|nearest_transcripts=ENST00000392827.2:-248 AL136540:327 AF416715:329 BC016958:349 AM393547:363
 |nearest_unigene=Hs.512767
 |peak_score=1