TSS: Rfhg 123234.1: Difference between revisions

Revision as of 07:20, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_123234.1
Species:	human
Chr:	chr10

Start:	17029618
End:	17029627
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2319278,EH38E1451617)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	CUBN
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	100195
Nearest PromoterID:	NM_001081
Entrez ID:	8029
Nearest Unigene:	Hs.166206
Nearest Refseq:	NM_001081
Nearest Ensembl:	ENSG00000107611
Gene Name:	CUBN
Gene Alias:	IFCR\|MGA1\|gp280
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.100000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001081, intron 27 of 66)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001081
 |nearest_refseq=NM_001081
+|nearest_transcripts=
 |nearest_unigene=Hs.166206
 |peak_score=1