TSS: Rfhg 123255.1: Difference between revisions

Revision as of 07:21, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_123255.1
Species:	human
Chr:	chr10

Start:	17200615
End:	17200632
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2319456,EH38E1451768)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	TRDMT1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1049
Nearest PromoterID:	NM_001321007
Entrez ID:	1787
Nearest Unigene:	Hs.351665
Nearest Refseq:	NM_004412
Nearest Ensembl:	ENSG00000107614
Gene Name:	TRDMT1
Gene Alias:	DMNT2\|DNMT2\|MHSAIIP\|PUMET\|RNMT1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_004412, intron 1 of 10)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001321007
 |nearest_refseq=NM_004412
+|nearest_transcripts=
 |nearest_unigene=Hs.351665
 |peak_score=1