TSS: Rfhg 123757.1: Difference between revisions

Revision as of 07:42, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_123757.1
Species:	human
Chr:	chr10

Start:	22712381
End:	22712412
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2323933,EH38E1454759)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PIP4K2A
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1712
Nearest PromoterID:	NM_001330062
Entrez ID:	5305
Nearest Unigene:	Hs.57079
Nearest Refseq:	NM_005028
Nearest Ensembl:	ENSG00000150867
Gene Name:	PIP4K2A
Gene Alias:	PI5P4KA\|PIP5K2A\|PIP5KII-alpha\|PIP5KIIA\|PIPK
Gene Type:	protein-coding
CpG%:	0.032258
GC%:	0.375000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_005028, intron 1 of 9)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001330062
 |nearest_refseq=NM_005028
+|nearest_transcripts=
 |nearest_unigene=Hs.57079
 |peak_score=1