TSS: Rfhg 124328.1: Difference between revisions

Revision as of 08:12, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_124328.1
Species:	human
Chr:	chr10

Start:	30058880
End:	30058901
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2329783,EH38E1458794)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	JCAD
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	696
Nearest PromoterID:	NM_001350001
Entrez ID:	57608
Nearest Unigene:	Hs.533953
Nearest Refseq:	NM_020848
Nearest Ensembl:	ENSG00000165757
Gene Name:	JCAD
Gene Alias:	KIAA1462
Gene Type:	protein-coding
CpG%:	0.095238
GC%:	0.681818
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=intron (NM_001350021, intron 1 of 4)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001350001
 |nearest_refseq=NM_020848
+|nearest_transcripts=
 |nearest_unigene=Hs.533953
 |peak_score=1