TSS: Rfhg 125178.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=ENST00000585316.3:0 NM_001346932.2:0 NM_001346936.2:0 NM_001346935.2:0 NM_001346933.2:0 NM_001346934.2:0 NM_153034.4:0 DQ187714:0 DQ187718:0 BC051323:0 AK056666:0 LP895782:-7 ENST00000591025.1:11 BC026895:11 | |||
|annotation=promoter-TSS (NM_153034) | |annotation=promoter-TSS (NM_153034) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
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|nearest_promoter_id=NM_001346933 | |nearest_promoter_id=NM_001346933 | ||
|nearest_refseq=NM_153034 | |nearest_refseq=NM_153034 | ||
|nearest_transcripts=LP895782:-7 ENST00000591025.1:11 BC026895:11 | |||
|nearest_unigene=Hs.27788 | |nearest_unigene=Hs.27788 | ||
|peak_score=1 | |peak_score=1 | ||
| Line 33: | Line 35: | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000585316.3 BC051323 AK056666 | |transcript_name=ENST00000585316.3 NM_001346932.2 NM_001346936.2 NM_001346935.2 NM_001346933.2 NM_001346934.2 NM_153034.4 DQ187714 DQ187718 BC051323 AK056666 | ||
|tss_cluster_detected=2 | |tss_cluster_detected=2 | ||
|tss_id=rfhg_125178.1 | |tss_id=rfhg_125178.1 | ||
Revision as of 08:41, 7 November 2024
Basic information about the TSS
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| Source datasets | PRJNA548673 | |||||||||||||
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| Protocol | CAGE|ReCappable-seq | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2340573,EH38E1465935) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_001346933 |
| Entrez ID: | 118738 |
| Nearest Unigene: | Hs.27788 |
| Nearest Refseq: | NM_153034 |
| Nearest Ensembl: | ENSG00000265763 |
| Gene Name: | ZNF488 |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.101695 |
| GC%: | 0.733333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.