TSS: Rfhg 126054.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=
|annotation=Intergenic
|annotation=Intergenic
|ccre_category=dELS
|ccre_category=dELS
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|nearest_promoter_id=NM_001318154
|nearest_promoter_id=NM_001318154
|nearest_refseq=NM_004241
|nearest_refseq=NM_004241
|nearest_transcripts=
|nearest_unigene=Hs.413416
|nearest_unigene=Hs.413416
|peak_score=1
|peak_score=1

Revision as of 09:20, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_126054.1
Species:human
Chr:chr10
Start:63641887
End:63641894
Strand:+
Source datasetsPRJNA597322
ProtocolSTRIPE-seq
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:dELS (EH38D2352217,EH38E1473100)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:JMJD1C
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation

    Distance to TSS:-120000
    Nearest PromoterID:NM_001318154
    Entrez ID:221037
    Nearest Unigene:Hs.413416
    Nearest Refseq:NM_004241
    Nearest Ensembl:ENSG00000171988
    Gene Name:JMJD1C
    Gene Alias:KDM3C|TRIP-8|TRIP8
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.625000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



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