TSS: Rfhg 127656.1: Difference between revisions

Revision as of 10:22, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_127656.1
Species:	human
Chr:	chr10

Start:	80469019
End:	80469042
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2366889,EH38E1483285)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF334057:201 MA569634:201
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF334056:255 MA569633:255 view more...

Gene_name:	TSPAN14
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	767
Nearest PromoterID:	NM_001351271
Entrez ID:	81619
Nearest Unigene:	Hs.308615
Nearest Refseq:	NM_030927
Nearest Ensembl:	ENSG00000108219
Gene Name:	TSPAN14
Gene Alias:	DC-TM4F2\|TM4SF14\|tspan-14
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.625000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF334057:201 MA569634:201 LF334056:255 MA569633:255
 |annotation=intron (NM_001351270, intron 2 of 9)
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001351271
 |nearest_refseq=NM_030927
+|nearest_transcripts=LF334056:255 MA569633:255
 |nearest_unigene=Hs.308615
 |peak_score=1