TSS: Rfhg 127834.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000298767.10:0 NM_015045.5:0 NM_001318328.2:0 BC150269:0 LF384980:0 MA620557:0 D87450:0 AB065003:0 AF479418:0 AK290138:0 AB426838:0 AB426821:0 AB426822:0 AB426823:0 AB426824:0 AB426825:0 AB426826:0 AB426827:0 AB426828:0 AB426829:0 AB426830:0 AB426831:0 AB426832:0 AB426833:0 AB426834:0 AB426835:0 AB426837:0 AB426836:0 LF383456:0 MA619033:0 AB463350:8 LF333964:16 MA569541:16 LF333965:142 MA569542:142 BC140858:230
|annotation=promoter-TSS (NM_015045)
|annotation=promoter-TSS (NM_015045)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001318328
|nearest_promoter_id=NM_001318328
|nearest_refseq=NM_015045
|nearest_refseq=NM_015045
|nearest_transcripts=AB463350:8 LF333964:16 MA569541:16 LF333965:142 MA569542:142 BC140858:230
|nearest_unigene=Hs.203099
|nearest_unigene=Hs.203099
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000298767.10 BC150269 D87450 AB065003 AF479418 AK290138 AB426838 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426836
|transcript_name=ENST00000298767.10 NM_015045.5 NM_001318328.2 BC150269 LF384980 MA620557 D87450 AB065003 AF479418 AK290138 AB426838 AB426821 AB426822 AB426823 AB426824 AB426825 AB426826 AB426827 AB426828 AB426829 AB426830 AB426831 AB426832 AB426833 AB426834 AB426835 AB426837 AB426836 LF383456 MA619033
|tss_cluster_detected=11
|tss_cluster_detected=11
|tss_id=rfhg_127834.1
|tss_id=rfhg_127834.1

Revision as of 10:28, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_127834.1
TSS ID(Version3):hg_110413.1
Species:human
Chr:chr10
Start:86521738
End:86521829
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|PRJNA401781|PRJNA548673|PRJNA615891
|PRJNA4843412|DRA013844
ProtocolCAGE|TSS_database|ReCappable-seq|SLIC_CAGE|TIF-seq2|RAMPAGE
|NETCAGE
TSS cluster detected*11

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2370723,EH38E1485264)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000298767.10:0
NM_015045.5:0
NM_001318328.2:0
BC150269:0
LF384980:0
MA620557:0
D87450:0
AB065003:0
AF479418:0
AK290138:0
AB426838:0
AB426821:0
AB426822:0
AB426823:0
AB426824:0
AB426825:0
AB426826:0
AB426827:0
AB426828:0
AB426829:0
AB426830:0
AB426831:0
AB426832:0
AB426833:0
AB426834:0
AB426835:0
AB426837:0
AB426836:0
LF383456:0
MA619033:0
GeneID:23063
HGNC/MGI_ID:HGNC:23293
UniProt_ID:A8K273 B3Y1W5 B3Y1W8 B3Y1W9 B3Y1X2 B3Y1X4 B3Y1X5 B3Y1X6 B3Y1X7 B3Y1X8 Q7Z5K2
Nearer transcript ids and distances:
  • AB463350:8
  • LF333964:16
  • MA569541:16
  • LF333965:142
  • MA569542:142
  • BC140858:230
view more...
Gene_name:WAPL
Gene_symbol:WAPL
Gene_synonyms:FOE
Gene_source:HGNC:23293



TATA-Box annotation

Distance to TSS:1
Nearest PromoterID:NM_001318328
Entrez ID:23063
Nearest Unigene:Hs.203099
Nearest Refseq:NM_015045
Nearest Ensembl:ENSG00000062650
Gene Name:WAPL
Gene Alias:FOE|KIAA0261|WAPAL
Gene Type:protein-coding
CpG%:0.120879
GC%:0.739130
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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