TSS: Rfhg 128541.1: Difference between revisions

Revision as of 11:00, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_128541.1
Species:	human
Chr:	chr10

Start:	93612533
End:	93612542
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2376726,EH38E1489576)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000371447.4:0 NM_006204.4:0
GeneID:	5146
HGNC/MGI_ID:	HGNC:8787
UniProt_ID:	P51160
Nearer transcript ids and distances:	U31973:46 BC111377:173 view more...

Gene_name:	PDE6C
Gene_symbol:	PDE6C
Gene_synonyms:	ACHM5 COD4 PDEA2
Gene_source:	HGNC:8787

TATA-Box annotation

Distance to TSS:	0
Nearest PromoterID:	NM_006204
Entrez ID:	5146
Nearest Unigene:	Hs.658121
Nearest Refseq:	NM_006204
Nearest Ensembl:	ENSG00000095464
Gene Name:	PDE6C
Gene Alias:	ACHM5\|COD4\|PDEA2
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000371447.4:0 NM_006204.4:0 U31973:46 BC111377:173
 |annotation=promoter-TSS (NM_006204)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_006204
 |nearest_refseq=NM_006204
+|nearest_transcripts=U31973:46 BC111377:173
 |nearest_unigene=Hs.658121
 |peak_score=1
@@ Line 33: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000371447.4
+|transcript_name=ENST00000371447.4 NM_006204.4
 |tss_cluster_detected=2
 |tss_id=rfhg_128541.1