TSS: Rfhg 128878.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=NR_135921.1:-136 AB593180:-136
|annotation=promoter-TSS (NM_032440)
|annotation=promoter-TSS (NM_032440)
|ccre_category=PLS
|ccre_category=PLS
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|nearest_promoter_id=NM_001170765
|nearest_promoter_id=NM_001170765
|nearest_refseq=NM_015652
|nearest_refseq=NM_015652
|nearest_transcripts=
|nearest_unigene=Hs.427927
|nearest_unigene=Hs.427927
|peak_score=1
|peak_score=1
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|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=AB593180
|transcript_name=NR_135921.1 AB593180
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_128878.1
|tss_id=rfhg_128878.1

Revision as of 11:14, 7 November 2024

Basic information about the TSS


TSS ID:rfhg_128878.1
Species:human
Chr:chr10
Start:96832306
End:96832322
Strand:-
Source datasetsENCODE
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2379195,EH38E1491374)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NR_135921.1:-136
AB593180:-136
GeneID:102723665
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:LCOR
    Gene_symbol:LOC102723665
    Gene_synonyms:
    Gene_source:EntrezGene:102723665



    TATA-Box annotation


    Distance to TSS:16
    Nearest PromoterID:NM_001170765
    Entrez ID:84458
    Nearest Unigene:Hs.427927
    Nearest Refseq:NM_015652
    Nearest Ensembl:ENSG00000196233
    Gene Name:LCOR
    Gene Alias:C10orf12|MLR2
    Gene Type:protein-coding
    CpG%:0.125000
    GC%:0.705882
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.