TSS: Rfhg 12948.1: Difference between revisions

Revision as of 11:41, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_12948.1
Species:	human
Chr:	chr1

Start:	153543768
End:	153543770
Strand:	-

Source datasets

PRJNA4843412

Protocol

NETCAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D2223669,EH38E1385462)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF352400:63 MA587977:63
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF352399:-65 MA587976:-65 LF352398:-145 MA587975:-145 view more...

Gene_name:	LOC101928034
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1973
Nearest PromoterID:	NR_125947
Entrez ID:	101928034
Nearest Unigene:	Hs.711397
Nearest Refseq:	NR_125947
Nearest Ensembl:
Gene Name:	LOC101928034
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF352400:63 MA587977:63 LF352399:-65 MA587976:-65 LF352398:-145 MA587975:-145
 |annotation=exon (NM_019554, exon 4 of 4)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_125947
 |nearest_refseq=NR_125947
+|nearest_transcripts=LF352399:-65 MA587976:-65 LF352398:-145 MA587975:-145
 |nearest_unigene=Hs.711397
 |peak_score=1