TSS: Rfhg 130057.1: Difference between revisions

Revision as of 12:07, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_130057.1
Species:	human
Chr:	chr10

Start:	108561720
End:	108561724
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2389053,EH38E1497982)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000366253.2:-91
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	LINC01435
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-492429
Nearest PromoterID:	NR_125760
Entrez ID:	103695365
Nearest Unigene:	Hs.648991
Nearest Refseq:	NR_125760
Nearest Ensembl:	ENSG00000229981
Gene Name:	LINC01435
Gene Alias:	TCONS_00018040
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000366253.2:-91
 |annotation=Intergenic
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_125760
 |nearest_refseq=NR_125760
+|nearest_transcripts=
 |nearest_unigene=Hs.648991
 |peak_score=1