TSS: Rfhg 131377.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans=AL832925:0 LF370168:0 MA605745:0 LF370167:-128 MA605744:-128 BC152728:-394 AK307386:-401 | |||
|annotation=exon (NM_017580, exon 1 of 9) | |annotation=exon (NM_017580, exon 1 of 9) | ||
|ccre_category=pELS | |ccre_category=pELS | ||
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|nearest_promoter_id=NM_017580 | |nearest_promoter_id=NM_017580 | ||
|nearest_refseq=NM_017580 | |nearest_refseq=NM_017580 | ||
|nearest_transcripts=LF370167:-128 MA605744:-128 BC152728:-394 AK307386:-401 | |||
|nearest_unigene=Hs.595158 | |nearest_unigene=Hs.595158 | ||
|peak_score=1 | |peak_score=1 | ||
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|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=AL832925 | |transcript_name=AL832925 LF370168 MA605745 | ||
|tss_cluster_detected=1 | |tss_cluster_detected=1 | ||
|tss_id=rfhg_131377.1 | |tss_id=rfhg_131377.1 | ||
Revision as of 13:14, 7 November 2024
Basic information about the TSS
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| Source datasets | PRJDB5282 | |||||||||||||
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| Protocol | C1CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D2403870,EH38E1508110) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 872 |
|---|---|
| Nearest PromoterID: | NM_017580 |
| Entrez ID: | 54764 |
| Nearest Unigene: | Hs.595158 |
| Nearest Refseq: | NM_017580 |
| Nearest Ensembl: | ENSG00000019995 |
| Gene Name: | ZRANB1 |
| Gene Alias: | TRABID |
| Gene Type: | protein-coding |
| CpG%: | 0.004484 |
| GC%: | 0.410714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.