TSS: Rfhg 132232.1: Difference between revisions

Revision as of 13:52, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_132232.1
Species:	human
Chr:	chr11

Start:	707064
End:	707088
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2413052,EH38E1513854)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001367390.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000683307.1:-30 ENST00000526857.2:440 view more...

Gene_name:	DEAF1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	7
Nearest PromoterID:	NM_001367390
Entrez ID:	10522
Nearest Unigene:	Hs.243994
Nearest Refseq:	NM_021008
Nearest Ensembl:	ENSG00000177030
Gene Name:	DEAF1
Gene Alias:	MRD24\|NUDR\|SPN\|ZMYND5
Gene Type:	protein-coding
CpG%:	0.041667
GC%:	0.680000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001367390.1:0 ENST00000683307.1:-30 ENST00000526857.2:440
 |annotation=promoter-TSS (NM_001367390)
 |ccre_category=pELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001367390
 |nearest_refseq=NM_021008
+|nearest_transcripts=ENST00000683307.1:-30 ENST00000526857.2:440
 |nearest_unigene=Hs.243994
 |peak_score=1