TSS: Rfhg 132251.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|all_trans=ENST00000530666.1:479
|annotation=exon (NM_006755, exon 5 of 8)
|annotation=exon (NM_006755, exon 5 of 8)
|ccre_category=N
|ccre_category=N
Line 25: Line 26:
|nearest_promoter_id=NM_001318822
|nearest_promoter_id=NM_001318822
|nearest_refseq=NM_182612
|nearest_refseq=NM_182612
|nearest_transcripts=
|nearest_unigene=Hs.218362
|nearest_unigene=Hs.218362
|peak_score=1
|peak_score=1

Revision as of 13:53, 7 November 2024

Basic information about the TSS

TSS ID:rfhg_132251.1
Species:human
Chr:chr11
Start:763499
End:763503
Strand:+
Source datasetsPRJNA401781
Protocololigo_capping
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000530666.1:479
GeneID:6888
HGNC/MGI_ID:HGNC:11559
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:GATD1
    Gene_symbol:TALDO1
    Gene_synonyms:
    Gene_source:HGNC:11559



    TATA-Box annotation

    Distance to TSS:13986
    Nearest PromoterID:NM_001318822
    Entrez ID:347862
    Nearest Unigene:Hs.218362
    Nearest Refseq:NM_182612
    Nearest Ensembl:ENSG00000177225
    Gene Name:GATD1
    Gene Alias:PDDC1
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.400000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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