TSS: Rfhg 133064.1: Difference between revisions

Revision as of 14:36, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_133064.1
Species:	human
Chr:	chr11

Start:	2132220
End:	2132233
Strand:	-

Source datasets

FANTOM5|ENCODE|RAMPAGE

Protocol

CAGE|RAMPAGE

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	DNase-H3K4me3 (EH38D2414732,EH38E1515080)
Category:	DNase-H3K4me3

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	LF370732:1 MA606309:1
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	LF370731:104 MA606308:104 AF318382:485 view more...

Gene_name:	MIR483
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	1983
Nearest PromoterID:	NR_030158
Entrez ID:	619552
Nearest Unigene:
Nearest Refseq:	NR_030158
Nearest Ensembl:	ENSG00000207805
Gene Name:	MIR483
Gene Alias:	MIRN483\|hsa-mir-483\|mir-483
Gene Type:	ncRNA
CpG%:	0.000000
GC%:	0.642857
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=LF370732:1 MA606309:1 LF370731:104 MA606308:104 AF318382:485
 |annotation=non-coding (NR_003512, exon 7 of 7)
 |ccre_category=DNase-H3K4me3
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NR_030158
 |nearest_refseq=NR_030158
+|nearest_transcripts=LF370731:104 MA606308:104 AF318382:485
 |nearest_unigene=
 |peak_score=1