TSS: Rfhg 133302.1: Difference between revisions

Revision as of 14:45, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_133302.1
Species:	human
Chr:	chr11

Start:	2940612
End:	2940618
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	dELS (EH38D2415917,EH38E1515889)
Category:	dELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	PHLDA2
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-11195
Nearest PromoterID:	NM_003311
Entrez ID:	7262
Nearest Unigene:	Hs.154036
Nearest Refseq:	NM_003311
Nearest Ensembl:	ENSG00000181649
Gene Name:	PHLDA2
Gene Alias:	BRW1C\|BWR1C\|HLDA2\|IPL\|TSSC3
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.714286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=
 |annotation=Intergenic
 |ccre_category=dELS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_003311
 |nearest_refseq=NM_003311
+|nearest_transcripts=
 |nearest_unigene=Hs.154036
 |peak_score=1