TSS: Rfhg 133425.1: Difference between revisions

Revision as of 14:51, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_133425.1
Species:	human
Chr:	chr11

Start:	3854599
End:	3854636
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2416729,EH38E1516439)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000430222.1:0 NM_001382574.1:0 NM_001382576.1:0 NM_001382581.1:0 NM_001382580.1:0 NM_001382575.1:0 NM_001382578.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000525403.5:-72

Gene_name:	STIM1
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	-1047
Nearest PromoterID:	NM_001277962
Entrez ID:	6786
Nearest Unigene:	Hs.501735
Nearest Refseq:	NM_003156
Nearest Ensembl:	ENSG00000167323
Gene Name:	STIM1
Gene Alias:	D11S4896E\|GOK\|IMD10\|STRMK\|TAM\|TAM1
Gene Type:	protein-coding
CpG%:	0.054054
GC%:	0.500000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=ENST00000430222.1:0 NM_001382574.1:0 NM_001382576.1:0 NM_001382581.1:0 NM_001382580.1:0 NM_001382575.1:0 NM_001382578.1:0 ENST00000525403.5:-72
 |annotation=Intergenic
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001277962
 |nearest_refseq=NM_003156
+|nearest_transcripts=ENST00000525403.5:-72
 |nearest_unigene=Hs.501735
 |peak_score=1