TSS: Rfhg 134132.1: Difference between revisions

Revision as of 15:26, 7 November 2024

Basic information about the TSS

TSS ID:	rfhg_134132.1
Species:	human
Chr:	chr11

Start:	10450402
End:	10450417
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2421852,EH38E1519987)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	NM_001172431.2:-14
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:	ENST00000529835.6:-81 ENST00000444303.6:-81 AK295046:-81 ENST00000396554.7:264 BC126118:264 NM_000480.3:274 ENST00000524866.5:283 AK311436:283 M84720:425 view more...

Gene_name:	AMPD3
Gene_symbol:
Gene_synonyms:
Gene_source:

TATA-Box annotation

Distance to TSS:	88
Nearest PromoterID:	NM_001172431
Entrez ID:	272
Nearest Unigene:	Hs.501890
Nearest Refseq:	NM_000480
Nearest Ensembl:	ENSG00000133805
Gene Name:	AMPD3
Gene Alias:	-
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.375000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetailV4
+|all_trans=NM_001172431.2:-14 ENST00000529835.6:-81 ENST00000444303.6:-81 AK295046:-81 ENST00000396554.7:264 BC126118:264 NM_000480.3:274 ENST00000524866.5:283 AK311436:283 M84720:425
 |annotation=promoter-TSS (NM_001172431)
 |ccre_category=PLS
@@ Line 25: / Line 26: @@
 |nearest_promoter_id=NM_001172431
 |nearest_refseq=NM_000480
+|nearest_transcripts=ENST00000529835.6:-81 ENST00000444303.6:-81 AK295046:-81 ENST00000396554.7:264 BC126118:264 NM_000480.3:274 ENST00000524866.5:283 AK311436:283 M84720:425
 |nearest_unigene=Hs.501890
 |peak_score=1